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Standard Guidelines for the Chromosome-Centric Human Proteome Project

Author

  • Young-Ki Paik
  • Gilbert S. Omenn
  • Mathias Uhlen
  • Samir Hanash
  • György Marko-Varga
  • Ruedi Aebersold
  • Amos Bairoch
  • Tadashi Yamamoto
  • Pierre Legrain
  • Hyoung-Joo Lee
  • Keun Na
  • Seul-Ki Jeong
  • Fuchu He
  • Pierre-Alain Binz
  • Toshihide Nishimura
  • Paul Keown
  • Mark S. Baker
  • Jong Shin Yoo
  • Jerome Garin
  • Alexander Archakov
  • John Bergeron
  • Ghasem Hosseini Salekdeh
  • William S. Hancock

Summary, in English

The objective of the international Chromosome-Centric Human Proteome Project (C-HPP) is to map and annotate all proteins encoded by the genes on each human chromosome. The C-FIPP consortium was established to organize a collaborative network among the research teams responsible for protein mapping of individual chromosomes and to identify compelling biological and genetic mechanisms influencing colocated genes and their protein products. The C-HPP aims to foster the development of proteome analysis and integration of the findings from related molecular -omics technology platforms through collaborations among universities, industries, and private research groups. The C-HPP consortium leadership has elicited broad input for standard guidelines to manage these international efforts more efficiently by mobilizing existing resources and collaborative networks. The C-HPP guidelines set out the collaborative consensus of the C-HPP teams, introduce topics associated with experimental approaches, data production, quality control, treatment, and transparency of data, governance of the consortium, and collaborative benefits. A companion approach for the Biology and Disease-Driven HPP (B/D-HPP) component of the Human Proteome Project is currently being organized, building upon the Human Proteome Organization's organ-based and biofluid-based initiatives (www.hupo.org/research). The common application of these guidelines in the participating laboratories is expected to facilitate the goal of a comprehensive analysis of the human proteome.

Publishing year

2012

Language

English

Pages

2005-2013

Publication/Series

Journal of Proteome Research

Volume

11

Issue

4

Document type

Journal article

Publisher

The American Chemical Society (ACS)

Topic

  • Medical Engineering

Keywords

  • antibody
  • Biology/Disease-Driven Human Proteome Project
  • Chromosome-Centric Human Proteome Project
  • Human Genome Project
  • Human
  • Proteome Project
  • Human Proteome Organization
  • knowledge-base
  • mass
  • spectrometry

Status

Published

ISBN/ISSN/Other

  • ISSN: 1535-3893